rs49847380 SNP Detail

Summary

• ID
  rs49847380
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:91191033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTGACAA ATGAGGCTCT
  AAAAATTGAA ATTATTTCTT CTTTAGACTA CTAGTTCTCT AACCACCAAA CTCATTATAG
  TTACAAAATG GTTAAGAACA TTTGTTTATC CATTTATTTG AAAAGATATT AGTCAGTCAC
  CTAGTAGTGT TTTGGGTTGT TTTTGAGGTG TTGGGGATCA AACCTGGGGT CATGCATAGG
  Y
  GAGGTATGTG CTCTCCCACT GAGCTGGCTG TCCCCAGTCT GTCACCACTA ACGCTCCCAG
  CAACTGTGTC CTCTGCAGAT TGTCCACTAG TTCCTACTGC TAGAGACAAA GCAAGTCTGG
  ACTTGGAGGG GGGATTCCCT TCGTGCACAC AGCTTCAGAA GTGCCAATGG TGCCTGCAAA
  GCCTACTTTG TGTGCTTTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146924395	ENSMUSSNP4944826	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49847380					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91191033 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cstpp1	centriolar satellite-associated tubulin polyglutamylase complex regulator 1			Intron
				Noncoding-Transcript-Variant
Rr373536	regulatory region 373536			within coordinates
Rr560718	regulatory region 560718			125 bp proximal