rs49848276 SNP Detail

Summary

• ID
  rs49848276
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83141933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTATTATA TTTCATTTGG
  TAGTTTGTGT GTACAGTGTA TATGTGTATG TGGTGGTGGT GTGTGTATGT GTGTGTATGT
  GTGATATGTG GTGTGCGTGT GGTCTGGTGT GTCCGTGTGT TTGGTCAGTT CTCTCCTATC
  TTCACGTGGA TTCCAGGAAT CACACTCAAG TTGTCAGGCT TGTATGGTAA GTCCCTTTAG
  Y
  TGCTGACCCA TTCCACAGGC TCCAGTTTGA TTTTTGAATG GTAGGAATGC ATTGTATGTT
  CAGAATAAAT AGAAATATTT AGAAGGTGAA ATGGGGGTGA GAGGATTGCT ATAGAGGAGG
  TGTCCATTCT TTCTAGATCC TGTCACTGAC AGTCATTTTA CAAATAAGGA CATGATACTG
  AGAGGCTGTT ACCAGCACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60903809	NES15947224	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49848276					SNP	T	T	T	T	T	T	C	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60903809	NES15947224	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83141933 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17595	CpG island 17595	617 bp proximal
Dctn1	dynactin 1	969 bp upstream
Gm15624	predicted gene 15624	1201 bp downstream
Rr399719	regulatory region 399719	578 bp upstream
Tssr57316	transcription start site region 57316	969 bp upstream