rs49848966 SNP Detail

Summary

• ID
  rs49848966
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88186543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTGGAAG TCCCTGGAGA
  GTTCCTTTGG TCACAGTAAC GACAGCATCA ATGAACAGAT GACAGTTTTT CAGACAAACA
  TGTGCTCCGT CCTGGTGAGA GGACCAAGTG AGGGGGCAAG GTTGGGTTTA TGACCCTATT
  TTTACCTTTT ACCATGAAAA TACCTAACAG GACAATGCAG GGGCACCTAT GTGAACTTCT
  Y
  TAACTGCCAC TATCAGAGAG TAAAGAAACA AAAGTTAATT TTGTCTAAAG AATTTATTTA
  GCCCCAACTA ACCAGATTAT GGCCATTTCA AGATATGATC GAGGGGAAAA ATTGTTATGT
  GGTATTTTTG CATTTGTTGG TCGGTTGGTT GGTAACAATC TTCAAAGTCC AGGAAGGTCC
  CTGACAGGAA GGAATGCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	C57BL/6J	FVB/NJ	SPRET/EiJ	ZALENDE/EiJ
ss350399124	MGP_WTSI_1_90155396	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	C57BL/6J	FVB/NJ	SPRET/EiJ	ZALENDE/EiJ
rs49848966					SNP	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350399124	MGP_WTSI_1_90155396	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88186543 () rs orientation: forward

Symbol	Name	Function Class
Mroh2a	maestro heat-like repeat family member 2A	within coordinates
Tssr7958	transcription start site region 7958	289 bp upstream
Tssr7959	transcription start site region 7959	311 bp upstream
Tssr7960	transcription start site region 7960	326 bp upstream
Tssr7961	transcription start site region 7961	373 bp upstream
Tssr7962	transcription start site region 7962	527 bp upstream
Tssr7963	transcription start site region 7963	555 bp upstream
Tssr7964	transcription start site region 7964	570 bp upstream
Tssr7965	transcription start site region 7965	606 bp upstream