rs49849571 SNP Detail

Summary

• ID
  rs49849571
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:25210953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGGTCTG TTTTCTTTTA
  CTTTTTTTTC TACAGTTGAA AATGGTGAAC ATTGTGATTT CACAATTCTA AGAAATATGT
  TGATAAGGTA AGTATGAGCA GCAATGAAAG CAGTACAGGG TTTTAGCACC CAAAGAAAGT
  TAAAGTTCAG AAGACTGACT TTGTCTTCTG TAGATGGAGC TACTGTGTGT GACATCTTTG
  Y
  TTCTATTGAC TTGTAAATAG TGTGTGACAA TAATTTACAT TGTTTTTCCA AAATTTGAGT
  CATTAGCTGC TTTGAATGTG CATAGCTTCA GAACTGGTGA GTAGGACTCG CTAGTATTGC
  AGAGAACTTG GCCATGCTTG CAGGAGGACT TAATAAGCAT CAGCAAGGCA CTTCATGCAC
  ATAGGAAAAT ATAAATTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61362693	NES16739072	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49849571					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61362693	NES16739072	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:25210953 () rs orientation: forward

Symbol	Name	Function Class
Septin7	septin 7	within coordinates
Tssr84136	transcription start site region 84136	1831 bp downstream
Tssr84137	transcription start site region 84137	1811 bp downstream
Tssr84138	transcription start site region 84138	1774 bp downstream
Tssr84139	transcription start site region 84139	138 bp downstream
Tssr84140	transcription start site region 84140	1808 bp upstream