rs49849651 SNP Detail

Summary

• ID
  rs49849651
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75368993 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCACCGTT ACTCATTTTG
  CAGTAAAACC CTTGTCTCCA AATCGCACGT TCTGTTTTCC TTCTTGTCTC TTGGGTGCAA
  CCTGGTTTGT CTTTCTGTTT TTAAAGTTCT TGGTGGAAGT GGAACTGTGT GGGAACCGAG
  AGCTGTAAGG CAGTGAGTGG TTCCAAAGCT CTTTAAAAGG ACACCCAGGT CTCACTGTCA
  M
  GGTGGTTGGC TGTGATTACC GGTGTTGGTG CTGTCTCCAT GTTCAGTGGT AGATATACCG
  CGCTTGTTTG CCTGTATGTG CTTGCTTCTC TGGAGATTTG AGAACGAAAA CTGGAAAGAA
  CCTATTACAG AGACGGGAAA ATCCAACTGA GAATTCAAGT AAGGGGCACT TCCTTCCAGT
  CACCTCCCTT AAGTGTTTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	MSM/Ms
ss139749547	ENSMUSSNP5576658	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	MSM/Ms
rs49849651					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75368993 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6736	CpG island 6736	761 bp distal
Cpgi6737	CpG island 6737	293 bp distal
Gm62951	predicted gene, 62951	932 bp upstream
Lcp1	lymphocyte cytosolic protein 1	within coordinates
Lrrc63	leucine rich repeat containing 63	672 bp upstream
Tssr4477	transcription start site region 4477	919 bp upstream
Tssr126606	transcription start site region 126606	403 bp downstream
Tssr126607	transcription start site region 126607	312 bp downstream
Tssr126608	transcription start site region 126608	275 bp downstream
Tssr126609	transcription start site region 126609	within coordinates
Tssr126610	transcription start site region 126610	31 bp upstream
Tssr126611	transcription start site region 126611	468 bp upstream
Tssr126612	transcription start site region 126612	493 bp upstream
Tssr129761	transcription start site region 129761	948 bp upstream
Tssr129762	transcription start site region 129762	931 bp upstream
Tssr129763	transcription start site region 129763	904 bp upstream
Tssr129764	transcription start site region 129764	610 bp upstream
Tssr129765	transcription start site region 129765	507 bp upstream
Tssr129766	transcription start site region 129766	22 bp downstream
Tssr129767	transcription start site region 129767	64 bp downstream