rs49850085 SNP Detail

Summary

• ID
  rs49850085
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:14553951 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAACTGCCT GGAGAAACTC
  AGGATAATTT AAGGACCTGC CTGAAGGTCT GTGACTCAGG ATGGCTGAGC CTTACTGGCA
  GAGACTGAAT TTTAATGAGG TCTCCATGAA GCCAAGAACA GAGCCCTAAG GCCTTCACAA
  TTCAACTTTC CCTGGAACTT CACTAGAAAT GCAAATCCCA CCCTGGGTAT CAGGCTTCAG
  Y
  TGCCAGCAGC CTGCTGAGGT GGGGTTAGAG GGTGGTTGTA CAAGCAGATG ACCCCATGCC
  TTGCAATGTG TAAACAGAAA ACAGATGTGT GTCCCCACCC CCACCCCCAG CTTCTGAGTG
  TTCCAGCATC ACCGTGCTTT CTGCCTCTGC TCAGAGGAGT TCTTTTCTCT GCGAAGCAAT
  CTCTTGCTGC CAGCCACTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss60690279	NES16226458	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs49850085					SNP	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60690279	NES16226458	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:14553951 () rs orientation: forward

Symbol	Name	Function Class
Amotl1	angiomotin-like 1	within coordinates
Gm34263	predicted gene, 34263	994 bp upstream
Tssr2784	transcription start site region 2784	954 bp upstream
Tssr83841	transcription start site region 83841	992 bp upstream
Tssr88175	transcription start site region 88175	868 bp downstream
Tssr88176	transcription start site region 88176	900 bp downstream