rs49850907 SNP Detail

Summary

• ID
  rs49850907
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:106864294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T AAACTTTAGA GAGCTGTATC CTAAATGAAG CCGTGTCTGC
  TGGTAGAGAT CTGGAAGTTC AGCCTACCAA CCCCACTTGG GGTTTGCCTG CTTGTTTTTG
  T
  CTCTCTTGGA TGATGATAGA AGTGTTATCT GGCTATTGAA AGCACTCCAG CAGAGAGCGG
  CTAGAGTTGA GATGTGTAGA GTTGAGTCTG CATCCCCCAA C                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss145731893	ENSMUSSNP2864882	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49850907					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106864294 () rs orientation: forward

Symbol	Name	Function Class
1810019D21Rik	RIKEN cDNA 1810019D21 gene	within coordinates
Cpgi20965	CpG island 20965	33 bp distal
Cpgi20966	CpG island 20966	348 bp proximal
Esrp2	epithelial splicing regulatory protein 2	688 bp upstream
Rr185913	regulatory region 185913	within coordinates
Tssr79224	transcription start site region 79224	1773 bp downstream
Tssr79225	transcription start site region 79225	1709 bp downstream
Tssr79226	transcription start site region 79226	588 bp downstream
Tssr79227	transcription start site region 79227	746 bp upstream
Tssr82757	transcription start site region 82757	786 bp upstream
Tssr82758	transcription start site region 82758	761 bp upstream
Tssr82759	transcription start site region 82759	267 bp upstream