rs49852478 SNP Detail

Summary

• ID
  rs49852478
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:61178332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACGGCAGT AGGTAAGGCC
  AAGGCAGGCC CCCTGGTGCT GGCTGAAGAC CTCCTGTGTG GTCAGGCACT TCTGGAACCT
  GGGGGCAGTA GGGCTCTTGG TGTTGGGGAC AGGTGCGCTC AGGTGGGCCT TCAGCTGGGC
  CTCCAGAGCC TGGACAAGAG CGGAACAGAG GGCAGAGGCC ACTGAGACAG GCCAGAGAGG
  S
  AGGAGCCTAA TGCAGCCATG GGTCAGAACT CAAGAGCCCC AGCCTCCCGT CAGAACCACA
  CCACAGAGAC AGAAAAGCCA CAGGAGTATG GTGACATAGG GACACAGGAA TAGTAGTCCT
  GGAACAGTCT TAAGCCTCCG AGCTCCTTCA TCCATATAAC AGGAACACAG AGCCCTCTGG
  CTCTCTCCCT TCACCCCAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52341803	NES15289127	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49852478					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52341803	NES15289127	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:61178332 () rs orientation: forward

Symbol	Name	Function Class
Pald1	phosphatase domain containing, paladin 1	within coordinates
Rr215532	regulatory region 215532	332 bp distal
Rr215533	regulatory region 215533	1069 bp proximal
Rr223113	regulatory region 223113	1894 bp distal
Rr228160	regulatory region 228160	511 bp distal
Rr228161	regulatory region 228161	1279 bp proximal