rs49853562 SNP Detail

Summary

• ID
  rs49853562
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153795479 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGACATGA GCCATAGAGA
  GCAGCTTGAC CAAAGCTCAG GTGGCCTCCT GGGGCACTGC TGCTCTGGGG ACACAGTTCC
  AGCTGCCTTG GGGCCTCTGA AGGAGGCATT ACTAAGTCTC AGAGACATTG CCTCTTTTGG
  TTGGGTTTTT GGACCCCAAG TTTCTCTGGG AAAACATCCT GAAAATCTCT ATGAATAACC
  G
  GTTGGCCAAA TGTCTGATTA GTTGGTGTTC ATGACCTTTT TGTTCATGGA CCAAGAGTTC
  GTACAGAAGA CTATCAGCCC TCTTGTGTCT TCTTAGGCAT AATCGCCCTC ATCCGAGCCA
  TGAGCAAAAT CTGCTTGAGA AGCAGTTGCT TCCCATGCCC TCTGAAAGTG TCCAAGGGCT
  TGTGCAGTGT CCAGGGCCTG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148011271	ENSMUSSNP6501392	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49853562					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153795479 () rs orientation: forward

Symbol	Name	Function Class
Bpifb4	BPI fold containing family B, member 4	Intron
Rr567759	regulatory region 567759	238 bp distal
Rr567760	regulatory region 567760	466 bp distal
Rr567761	regulatory region 567761	437 bp proximal