rs49853976 SNP Detail

Summary

• ID
  rs49853976
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:80049907 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCACGTTGG AAGGGGTTGT
  CTGTGGTAGG TGGGGCATGA GCAGGTGCAT ACCAGCTGGC ATTAACGGGA GAGAGGCTTG
  TGGTGTTGGC CCCAGCCTGG CTGTACACAG CCAAGTCCTT TGGCAACCAA GAGGGGGTGG
  TTGTTAAAAA TACAGGTTTC CTGGCTCTAC TTTGGACATG CAAAGCAAAC AGAGGACGAT
  R
  CTGTTCCAGG GAGACCCATG AGCATCTGCA GGTATATAAG AAGGACAGGC AGACAAGTGC
  CTGCCTTCCT GCCTGCTATC TTCATTTGGT GCTTCATCTA GATGCCTCTG GGTGATCTTG
  GATAATGCCC AGGAACCTCA GTGATTGCCA TCTTATCTCT AACGGCAAGA TAAGGGACAG
  GACACAGGTA AGACAATACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63569636	NES17022912	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49853976					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63569636	NES17022912	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:80049907 () rs orientation: forward

Symbol	Name	Function Class
Gm62534	predicted gene, 62534	within coordinates
Rr505894	regulatory region 505894	1705 bp distal
Rr505896	regulatory region 505896	within coordinates
Tssr132168	transcription start site region 132168	22 bp downstream
Tssr132169	transcription start site region 132169	61 bp upstream