rs49854096 SNP Detail

Summary

• ID
  rs49854096
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69835696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTAT TATTATTATT ATTATTATTA
  Y
  TATTATTATT GAGTAAATCA ACCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss137860570	ENSMUSSNP6271307	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49854096					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69835696 () rs orientation: forward

Symbol	Name	Function Class
4930512B01Rik	RIKEN cDNA 4930512B01 gene	1422 bp upstream
Cdkl1	cyclin dependent kinase like 1	within coordinates
Cpgi4702	CpG island 4702	1550 bp proximal
Rr265514	regulatory region 265514	104 bp proximal
Tssr116527	transcription start site region 116527	1333 bp downstream
Tssr116528	transcription start site region 116528	1352 bp downstream
Tssr116529	transcription start site region 116529	1359 bp downstream
Tssr116530	transcription start site region 116530	1683 bp downstream
Tssr116531	transcription start site region 116531	1738 bp downstream