rs49854877 SNP Detail

Summary

• ID
  rs49854877
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:45570080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAAC AGTGAGCTGG TGCATCTTCA
  R
  CACTCTGTCC CTGGGCCGTG TGGGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61002548	NES16125149	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49854877					SNP	A	A	A	A	A	G	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61002548	NES16125149	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45570080 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Emp3	epithelial membrane protein 3			Intron
				mRNA-UTR
Gm45442	predicted gene 45442			1484 bp downstream
Rr400324	regulatory region 400324			534 bp upstream
Rr646608	regulatory region 646608			1181 bp distal
Rr646609	regulatory region 646609			185 bp proximal
Rr646610	regulatory region 646610			1395 bp proximal
Tssr72489	transcription start site region 72489			1297 bp upstream
Tssr72490	transcription start site region 72490			463 bp upstream
Tssr72491	transcription start site region 72491			235 bp upstream
Tssr72492	transcription start site region 72492			20 bp upstream
Tssr72493	transcription start site region 72493			within coordinates
Tssr72494	transcription start site region 72494			19 bp downstream
Tssr72495	transcription start site region 72495			25 bp downstream
Tssr72496	transcription start site region 72496			44 bp downstream
Tssr72497	transcription start site region 72497			174 bp downstream
Tssr72498	transcription start site region 72498			455 bp downstream
Tssr72499	transcription start site region 72499			605 bp downstream
Tssr72500	transcription start site region 72500			762 bp downstream