rs49857487 SNP Detail

Summary

• ID
  rs49857487
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:106965433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTTCCTGT CATACAATTC
  CAGCAGCGAA TGCTCATCTT CCAGAAGCAG AGTTGGGCTT CTTAATCTAG GCCTAGTTAA
  ACTTCCCCTA TTGCCCAAGC AAAGAGAGGG GGTGGAAGTG CTAATTCGAC CCTGTCACAA
  TCCAGCTACC ATAAAGGGAA GCCCTGTATG CAAACCACAT TAAACCTATC CTAAGATTTG
  M
  AGAACTACCA GGGTGGAGGG ACAGGGCTGA CAACCTTATC TCTGAATTAA AAGGTAAAAG
  CTGGCCTGGT CACCTGGGTG CTCATCAGCT CTGAAGTACT CCACAGTTCC AGAGCCAAGA
  GAGAGGCAAA GAAGAGACGT GAGCATGTCT TGTGTGTTAA ATATGCTACA TTCTGAGCCA
  CAATGTTGCA ACTGTATTCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61697963	NES17635225	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49857487					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61697963	NES17635225	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:106965433 () rs orientation: forward

Symbol	Name	Function Class
Gm61206	predicted gene, 61206	586 bp upstream