rs49857800 SNP Detail

Summary

• ID
  rs49857800
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156265407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATAA AACAGGCAGC CAAACACCTA
  M
  AACACAGTAA AGAAACCATG GCATC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60329463	NES15835716	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	C	A	C	A	C	C	C	A	A	A	C	A
ss145796564	ENSMUSSNP105560	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49857800					SNP	A	A	C	C	C	A	C	A	C	C	C	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60329463	NES15835716	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156265407 () rs orientation: forward

Symbol	Name	Function Class
Rr13324	regulatory region 13324	807 bp distal
Rr31351	regulatory region 31351	within coordinates
Rr396421	regulatory region 396421	222 bp downstream
Soat1	sterol O-acyltransferase 1	within coordinates
Tssr9565	transcription start site region 9565	1858 bp upstream
Tssr14442	transcription start site region 14442	1472 bp downstream