rs49860531 SNP Detail

Summary

• ID
  rs49860531
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43812586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTTCCTCA ATAAATACAT
  TTCTGAACGA GCTATCCAAA TAGAAATACA TTTATTTACT CTTTTATACC TCATCAACTA
  CCTAGCCACC AGTACATATG ATTGACCTGT CCAGGCTTGG GATCTTTCTC CTACAAAATA
  GAACTACCGT CTTATTCTTT ATAGTTTATT TAGCTAGTAT AATAATTACC CATTCTTCCA
  Y
  TTCAAACTAG AAACTATGAG TTTTTCATAA ACAGAAAACT TGTTACGTGA GCTTAGATCC
  AGTCAGGGCT CATTAGCTTC CTTAGAAAAA GTTAACTTTG GGCCTGGGGT GGTGGTTCAG
  CTGGTAAAAC TGTTGGACCT TGGAAGTCAA GGGAAAACCC AGGGGTAATT GGATCCCAAA
  GACAAAGAGG CAGAAGCATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62740091	NES17341103	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49860531					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62740091	NES17341103	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43812586 () rs orientation: forward

Symbol	Name	Function Class
Mep1a	meprin 1 alpha	within coordinates
Rr339847	regulatory region 339847	185 bp distal
Rr339848	regulatory region 339848	14 bp proximal
Rr339849	regulatory region 339849	814 bp proximal
Rr341637	regulatory region 341637	986 bp distal
Tssr148121	transcription start site region 148121	1022 bp downstream
Tssr148122	transcription start site region 148122	1100 bp downstream