rs49860658 SNP Detail

Summary

• ID
  rs49860658
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:87688185 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAATA CCATACAGGT TTTTTTTAAT
  Y
  ACTATTGCTC TTTAATACAG CTTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss139905497	ENSMUSSNP5403874	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
ss324697499	CHEV_14_87850556	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49860658					SNP	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:87688185 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr404242	regulatory region 404242			1461 bp upstream
Rr496366	regulatory region 496366			940 bp proximal
Rr496367	regulatory region 496367			1523 bp proximal
Tdrd3	tudor domain containing 3			Intron
				Noncoding-Transcript-Variant