rs49860694 SNP Detail

Summary

• ID
  rs49860694
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:15305036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCAGGAGC AGCAAAGTCA
  GTAGTAAATG TATATTATAA GATTTATTAA AAAAGAATTT GTTTATATAA CTTCATGATC
  GGCCCTTTGG CCAGCAGTGC TCAAATAGTG AGAGGGCTCC ATATAAGGAG TCTTCTGTCC
  TGTGAAAGTA AACATGCCTG AACTCCAGTT CACTCTGCTA CACATTTTCC TCTGTATCAC
  Y
  TAAAGCTGGA GATTGAACCC ATTTGGTGTT GTGCCCAGAC TCCAGCTTCT ATGTAGCTGG
  CTAGCCTCCA GGGATAATTT GATGTTCTGC AGTGTGACAA TAATAATTTA GCTTCTGTAG
  TAAAATGGAA AGTAAAAATT AGAGTGGGAG GGAGATGTGT GGTGATATTC CTGTTGCATC
  GCAGGAAAAT AGCAATTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss148700023	ENSMUSSNP1878649	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49860694					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:15305036 () rs orientation: forward

Symbol	Name	Function Class
Gm61108	predicted gene, 61108	901 bp downstream
Rr638	regulatory region 638	within coordinates
Rr766	regulatory region 766	within coordinates
Rr2063	regulatory region 2063	559 bp distal
Rr475207	regulatory region 475207	within coordinates