rs49860807 SNP Detail

Summary

• ID
  rs49860807
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116697915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCAGGTAG GTGCCCCTGA
  TTAGAGATCT CATTTATTTT TCCTTTGTGG AGCTGAAACG ACATCTTATG TCCTGTTTCA
  GCCGTGAGAT CAGTCCTTAT AGGAGCTAGA ACAAAGCTGC GAATCTCTCA GTTGCTAAAC
  CTCACCCTTG TGAACGGATC CAGCAAGTGT TCTTGTCTCT TGAAGATACA CTAACATGGA
  Y
  GGGTTCCTTT GGAAGACATC CCTGGTGCTC TAGTGACAGC ACAGGCCGTG TGTTTCCTCC
  TACTCCGTAT TTTCTATCTC TGCTGTGAGG ACTTACAGCC AGTGGGTGGC GCTGTAATAC
  CGGAGGACTC ATTTGTTCTG TTGCCACTAA GTGTTTTTAT TATGGGACTA TTTCCTTACA
  TCATATGCTC TGAATTCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60435751	NES15935107	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49860807					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60435751	NES15935107	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116697915 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13742	CpG island 13742			1857 bp proximal
Frrs1	ferric-chelate reductase 1			mRNA-UTR
				Noncoding-Transcript-Variant
Rr583800	regulatory region 583800			within coordinates
Rr583801	regulatory region 583801			125 bp distal
Rr583802	regulatory region 583802			95 bp proximal
Rr583803	regulatory region 583803			1702 bp proximal
Tssr31391	transcription start site region 31391			660 bp downstream
Tssr31392	transcription start site region 31392			578 bp downstream
Tssr31393	transcription start site region 31393			551 bp downstream
Tssr31394	transcription start site region 31394			514 bp downstream
Tssr31395	transcription start site region 31395			98 bp upstream