rs49862369 SNP Detail

Summary

• ID
  rs49862369
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:24792336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTCA GTCATGGAGA AATACTTAAT
  W
  CCCAGAGTTT TTATTATATA GCTAT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61262544	NES16880320	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs49862369					SNP	T	T	T	T	T	A	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61262544	NES16880320	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:24792336 () rs orientation: forward

Symbol	Name	Function Class
Arg1	arginase, liver	Coding-Synonymous
Tssr92746	transcription start site region 92746	801 bp downstream
Tssr92747	transcription start site region 92747	711 bp downstream
Tssr97085	transcription start site region 97085	945 bp upstream
Tssr97086	transcription start site region 97086	883 bp upstream
Tssr97087	transcription start site region 97087	857 bp upstream
Tssr97088	transcription start site region 97088	797 bp upstream
Tssr97089	transcription start site region 97089	782 bp upstream
Tssr97090	transcription start site region 97090	751 bp upstream
Tssr97091	transcription start site region 97091	356 bp upstream
Tssr97092	transcription start site region 97092	337 bp upstream
Tssr97093	transcription start site region 97093	310 bp upstream
Tssr97094	transcription start site region 97094	299 bp upstream
Tssr97095	transcription start site region 97095	282 bp upstream
Tssr97096	transcription start site region 97096	within coordinates
Tssr97097	transcription start site region 97097	246 bp downstream
Tssr97098	transcription start site region 97098	394 bp downstream
Tssr97099	transcription start site region 97099	1509 bp downstream
Tssr97100	transcription start site region 97100	1547 bp downstream