rs49863942 SNP Detail

Summary

• ID
  rs49863942
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:113393360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAG ATCTGAGAAT ATCTTTTCCC
  R
  TTTCAGAATG GAATGTGCAG AAAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss138742385	ENSMUSSNP5315509	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49863942					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:113393360 () rs orientation: forward

Symbol	Name	Function Class
Igh	immunoglobulin heavy chain complex	within coordinates
Ighd4-1	immunoglobulin heavy diversity 4-1	788 bp downstream
Ighg	Immunoglobulin heavy chain (gamma polypeptide)	within coordinates
Ighj1	immunoglobulin heavy joining 1	41 bp downstream
Ighj2	immunoglobulin heavy joining 2	225 bp upstream
Ighj3	immunoglobulin heavy joining 3	608 bp upstream
Ighj4	immunoglobulin heavy joining 4	1173 bp upstream
Rr554	regulatory region 554	1768 bp distal
Rr473804	regulatory region 473804	1883 bp distal
Tssr115504	transcription start site region 115504	487 bp upstream
Tssr118005	transcription start site region 118005	1193 bp upstream
Tssr118006	transcription start site region 118006	1162 bp upstream
Tssr118007	transcription start site region 118007	1116 bp upstream
Tssr118008	transcription start site region 118008	1089 bp upstream
Tssr118009	transcription start site region 118009	1078 bp upstream
Tssr118010	transcription start site region 118010	940 bp upstream
Tssr118011	transcription start site region 118011	842 bp upstream
Tssr118012	transcription start site region 118012	607 bp upstream
Tssr118013	transcription start site region 118013	592 bp upstream
Tssr118014	transcription start site region 118014	488 bp upstream
Tssr118015	transcription start site region 118015	392 bp upstream
Tssr118016	transcription start site region 118016	238 bp upstream
Tssr118017	transcription start site region 118017	80 bp downstream
Tssr118018	transcription start site region 118018	636 bp downstream
Tssr118019	transcription start site region 118019	653 bp downstream
Tssr118020	transcription start site region 118020	709 bp downstream
Tssr118021	transcription start site region 118021	849 bp downstream
Tssr118022	transcription start site region 118022	881 bp downstream
Tssr118023	transcription start site region 118023	1046 bp downstream