rs49864156 SNP Detail

Summary

• ID
  rs49864156
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:36477661 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGTTTTC ACATCTGCTT
  AGATTGGTCT TCTGGCTGTC TACCATTCCT CTGTCATCTT TGCTTATGTG TTGAATCACT
  CATCCACTCC TTTATTCACT CAATAAAGGA TCCATCAGCC TGAGCTTACA TCATCATAAA
  TCACAGTTAC CTTTGCTTGT TCCTCTATCT GTTCACTCAT TGAGCCCCTG ATGCAGATGC
  K
  CTGAGACCCA GAATACGCAC CTTTACCGAG GCATTGGTCT AGACCCTCCC TTTCTTAGAA
  TGTACCTTAG CCAACGTAAC TGGCATGGTG CTCTTTCCAT GAATGGCGAG GGCACAAAGG
  ATTTGGCAGT TTACAGTTCA GTTTCACTGT GGACGGGGAA CTCCCACGAT GCCTGGTATT
  CTTGCAGGTG GTGGATGTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146948406	ENSMUSSNP3034029	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49864156					SNP	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36477661 () rs orientation: forward

Symbol	Name	Function Class
Rr536102	regulatory region 536102	1661 bp distal
Rr536103	regulatory region 536103	1748 bp distal
Rr536104	regulatory region 536104	within coordinates
Rr536105	regulatory region 536105	1043 bp proximal
Rr536106	regulatory region 536106	1130 bp proximal
Tssr150615	transcription start site region 150615	1675 bp downstream
Tssr150616	transcription start site region 150616	1658 bp downstream
Tssr150617	transcription start site region 150617	1492 bp downstream
Tssr150618	transcription start site region 150618	19 bp downstream