rs49864301 SNP Detail

Summary

• ID
  rs49864301
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92473079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCATA ATTCTTAGTA GAAACAGTGG
  R
  GGAAAACGTG CATTTTATTG AGTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148831452	ENSMUSSNP4446397	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs49864301					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92473079 () rs orientation: forward

Symbol	Name	Function Class
Cxcl9	C-X-C motif chemokine ligand 9	within coordinates
Tssr1547	transcription start site region 1547	1582 bp downstream
Tssr47288	transcription start site region 47288	1441 bp downstream
Tssr47289	transcription start site region 47289	1431 bp downstream
Tssr47290	transcription start site region 47290	1416 bp downstream
Tssr47291	transcription start site region 47291	1374 bp downstream
Tssr47292	transcription start site region 47292	93 bp downstream
Tssr47293	transcription start site region 47293	1545 bp upstream
Tssr47294	transcription start site region 47294	1582 bp upstream
Tssr51867	transcription start site region 51867	1512 bp upstream
Tssr51868	transcription start site region 51868	1466 bp upstream
Tssr51869	transcription start site region 51869	1424 bp upstream
Tssr51870	transcription start site region 51870	1374 bp upstream
Tssr51871	transcription start site region 51871	1339 bp upstream
Tssr51872	transcription start site region 51872	86 bp upstream
Tssr51873	transcription start site region 51873	1570 bp downstream
Tssr51874	transcription start site region 51874	1595 bp downstream