rs49864725 SNP Detail

Summary

• ID
  rs49864725
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137177374 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTGA GGTATCACTG ACAAGAACAA
  W
  GAATGAAAAA ACTCAACAAA AAGTA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321701914	CHEV_5_137624397	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs49864725					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137177374 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr1677	transcription start site region 1677	733 bp downstream
Tssr1678	transcription start site region 1678	1958 bp downstream
Tssr49309	transcription start site region 49309	1252 bp upstream
Tssr49310	transcription start site region 49310	1612 bp upstream
Tssr49311	transcription start site region 49311	1626 bp upstream
Tssr53917	transcription start site region 53917	1820 bp upstream
Tssr53918	transcription start site region 53918	1760 bp upstream
Tssr53919	transcription start site region 53919	1112 bp downstream
Tssr53920	transcription start site region 53920	1128 bp downstream
Tssr53921	transcription start site region 53921	1283 bp downstream
Tssr53922	transcription start site region 53922	1324 bp downstream
Tssr53923	transcription start site region 53923	1365 bp downstream
Tssr53924	transcription start site region 53924	1379 bp downstream
Tssr53925	transcription start site region 53925	1417 bp downstream
Tssr53926	transcription start site region 53926	1448 bp downstream
Tssr53927	transcription start site region 53927	1597 bp downstream
Tssr53928	transcription start site region 53928	1615 bp downstream
Tssr53929	transcription start site region 53929	1652 bp downstream
Tssr53930	transcription start site region 53930	1717 bp downstream
Tssr53931	transcription start site region 53931	1742 bp downstream
Tssr53932	transcription start site region 53932	1758 bp downstream
Tssr53933	transcription start site region 53933	1796 bp downstream
Tssr53934	transcription start site region 53934	1828 bp downstream
Tssr53935	transcription start site region 53935	1879 bp downstream
Tssr53936	transcription start site region 53936	1900 bp downstream
Tssr53937	transcription start site region 53937	1990 bp downstream