rs49865545 SNP Detail

Summary

• ID
  rs49865545
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:44743012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATCTTCCC TTAGGAATAG
  ATGCTTGGAG GATGTCGAAT ATGAACAGGG TCTTATTGGG AGAAGAACAG CAGGCAGGAG
  TGACACTGAG AAAGGCTTAC ATGAACTTTA TAAGTGATGA AAAATTCCAA AAATATATTG
  ACAAATTATG ATATCATAGA TGCAGATGAT ATGTAAACCA TGATTTAATA ATGGTCTGGA
  Y
  TAATGGAAGC TAGATTAGAA CCAAAGGAAT AAGCTAGGGA CTATAGACCT CATTTAGGTG
  TTAGATCTTG AAGGCTTGGG TGGCAAAAAA AAAAAAAGTA AATGAAAAAG AGGCAGGATG
  AAGTCATGTT TTGAAGTTCT ACATCCCTCT TCCTAGGTAG CAAGTCATTT CAAAATGTCT
  GTGATGGCTA ATCTTGACTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52263069	NES15307215	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49865545					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52263069	NES15307215	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:44743012 () rs orientation: forward

Symbol	Name	Function Class
Gm47398	predicted gene, 47398	76 bp upstream
Gm66625	predicted gene, 66625	within coordinates
Rr431017	regulatory region 431017	1929 bp distal
Tssr97520	transcription start site region 97520	117 bp upstream