rs49866042 SNP Detail

Summary

• ID
  rs49866042
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:40505681 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGAATCAA ATGACTTTCA
  GGGAGGTTTA ATGTGGGCTT TTCCTACTAC TGAGCTGTGT GTGTTTCTGA GGAGGTGACA
  CTCAGCAAAT ACCAGTTCCC TTCTATAAAT ATTTGGTTCA TCCTAACTTA TTTTCTGAAT
  AAATTTTCCA TCTGCCACCA GGCCGGCATC TCAGCTATCA ACAACTCTGA ACAATGCGGC
  A
  GGGGAAACGA GTGCTTGGTT CTAGCTGGGA CTTTTTGGAA GTCAGACAGA CCACCCATTT
  ATTTGCCATG CAAACAAATC AGCCGGAGAA ACTCCAGGCT GGTGGCAAGC TGAAGTTCTT
  GAAAGCCAGA CAAAGACAGG TCATAGAGGA CGAAACTTCC CCTGCAGGCT TGGCAGAGAG
  GCAGTTCCAC AGAGCTTACA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss147067370	ENSMUSSNP1708594	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs49866042					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:40505681 () rs orientation: forward

Symbol	Name	Function Class
Ddo	D-aspartate oxidase	326 bp upstream
Rr214674	regulatory region 214674	81 bp distal
Rr224698	regulatory region 224698	within coordinates
Tssr93026	transcription start site region 93026	302 bp upstream
Tssr93027	transcription start site region 93027	372 bp upstream