rs49866517 SNP Detail

Summary

• ID
  rs49866517
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:48409098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCACTTAGAA TTAAGTAGTG TACAAGGTAG ATAGGTGGCT
  TTGCTCACAT GGCGCTTTAC ACTGTGTTAC TTGATTACCA CACCAGCCTG TAAGAAGGAT
  R
  CTGTACTTTA ATTTCTTTGC TGGGTAGTCT GAAAGTGAGG GGGATTCTCC AAGGTCTTTT
  AGCTGAGGCT CTTTGAAACT TGCAACACAG ACACCCACTT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ
ss61394041	NES16775885	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ
rs49866517					SNP	G	G	G	G	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61394041	NES16775885	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:48409098 () rs orientation: forward

Symbol	Name	Function Class
1700121I08Rik	RIKEN cDNA 1700121I08 gene	1441 bp upstream
Cpgi21716	CpG island 21716	1778 bp distal
Gm5617	predicted gene 5617	1826 bp downstream
Gm70225	predicted gene, 70225	within coordinates
Rr195326	regulatory region 195326	898 bp distal
Rr206379	regulatory region 206379	1297 bp distal
Tssr2862	transcription start site region 2862	1900 bp upstream
Tssr84994	transcription start site region 84994	1888 bp downstream