rs49866835 SNP Detail

Summary

• ID
  rs49866835
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:113620256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTCTGTAC ATTTTTTTGT
  CCCACAGAGT TTTCCACTCT TTGCTGATTT TTTTTTAATC ACATATTCAA ACTAAAGGAG
  TAAAATTACT GAGATCAGAA ATATTTTAGG ACAAAGTGCT CACTGTGAAG ATGTGGGGAA
  GGGGGTCGTT TGCATGGTGG ATGATGCTAC CTCTTCTTTC TTACGTGGTG TCCCTGCCTA
  Y
  GGGATGTCAT CTTGTTCCAC GTGGTAGTCT GTGACCAGAA ACTAAAGCAA TTAGAGCAAA
  CAATGTCGTC GTCTGAGACT GCAATAATAG AACAGCAAGT CTTACAGTAT AGTGATTTAG
  AGTGTTTGTG ATGAAAAATA TAAGCAATAA ACCCAGGGGA TTGATGTAAA GAGTCACCAT
  CTTGGGTGGT CATCTTGAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61225182	NES16842667	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs49866835					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61225182	NES16842667	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:113620256 () rs orientation: forward

Symbol	Name	Function Class
Clasp2	CLIP associating protein 2	within coordinates
Tssr87530	transcription start site region 87530	1547 bp upstream
Tssr87531	transcription start site region 87531	1643 bp upstream
Tssr87532	transcription start site region 87532	1793 bp upstream
Tssr87533	transcription start site region 87533	1840 bp upstream