rs49866842 SNP Detail

Summary

• ID
  rs49866842
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:154937171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGGTGAACA TGACTCAGAC AGTGAGCTCT CCCCACTCAC
  ACTGCGGTCC CCTCCGAAGC TGAGCAGGTC TGGAACCACA ACACACTTGC CCTTTCGGGG
  R
  GCAGGTTGGG GCACCTCTAC TTTGCCATCA GAGTTACAGA ATGTTCCCCT AGAGCGTCTA
  ACCCATGCTC TTCAAATGGC TTTAATGGTG GGAGGGAGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145774572	ENSMUSSNP3646552	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49866842					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:154937171 () rs orientation: forward

Symbol	Name	Function Class
Cpgi880	CpG island 880	1538 bp distal
Gm41980	predicted gene, 41980	1091 bp upstream
Gm51651	predicted gene, 51651	within coordinates
Gm70900	predicted gene, 70900	1833 bp upstream
Rr396410	regulatory region 396410	1566 bp downstream
Tssr248	transcription start site region 248	1895 bp upstream
Tssr9521	transcription start site region 9521	1715 bp downstream
Tssr9522	transcription start site region 9522	1479 bp downstream
Tssr9523	transcription start site region 9523	876 bp upstream
Tssr14331	transcription start site region 14331	1880 bp upstream
Tssr14332	transcription start site region 14332	1868 bp upstream
Tssr14333	transcription start site region 14333	1850 bp upstream