rs49867220 SNP Detail

Summary

• ID
  rs49867220
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:40554757 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACCCCTTT CTTGTCAAGG
  AGGCTGGCCA GAGGACAGCT TTGAATGCTT TATTTCAGGA GTTTTCTTCC GTGGATAAAG
  GTAGTTTACT TCATTTCTCC TTTGTTATGA CTGGGCATTT TCCAACACCA GAGGTCCTTT
  ACAAAATTCC AAGGTTGTCC TTTTCTGTCC AGGTATAACT TATTATTTCA AAACTGTATG
  S
  GTTGGATAGT CCTTAAATCT TCTTCAAGTA ACTCTCTTGC TAAGAAAAAA AAATGTAGCA
  GAACCCTTTG AAAATGGGTG TTTTTCACAC TTTTTTTTTC AGATGCACAA GCTGGCATTC
  ACTGACATAA AGACTTGAAT TTCTTTATTT GTTGTGTATG TAAGAGCAGG AAACAAAGGT
  AAGAGACCAG AATATTCTTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60721434	NES16360431	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49867220					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60721434	NES16360431	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:40554757 () rs orientation: forward

Symbol	Name	Function Class
Il18rap	interleukin 18 receptor accessory protein	within coordinates
Rr410075	regulatory region 410075	225 bp distal
Rr410076	regulatory region 410076	114 bp distal
Tssr65	transcription start site region 65	95 bp downstream
Tssr6477	transcription start site region 6477	166 bp downstream
Tssr6478	transcription start site region 6478	139 bp downstream
Tssr6479	transcription start site region 6479	114 bp downstream
Tssr11438	transcription start site region 11438	367 bp upstream
Tssr11439	transcription start site region 11439	850 bp downstream
Tssr11440	transcription start site region 11440	860 bp downstream
Tssr11441	transcription start site region 11441	878 bp downstream
Tssr11442	transcription start site region 11442	894 bp downstream
Tssr11443	transcription start site region 11443	925 bp downstream