rs49868559 SNP Detail

Summary

• ID
  rs49868559
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:118688095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGTTGGGT TTAGCTGGTC
  TTTACAAACT TACCCTTGGC CTGTGTGTGT ATATGTCCAA TGATCTCTTT AAACCTGAAA
  GCTGCCCGAA GTTCTTTTCA ATGGACGAGT AAGTGGGATT TCACTCAAAG GCTTCAACAA
  GTCTTCAGCA AAGTCTAGTG TTCAGCCGCA CTTCACACTT GAACCAAGCA CAGTCATCTT
  Y
  GATTCTCTCT GAACAAACGG GGTATCTCAG TCGACGTTGA TTCCAGGAAG CAAACTCGAA
  ATACCTGCAG CTACTTCTGA TGCACCAACA CCTGCTACTT CTATTTTCAT ACTCTGCATC
  CCCATCCATC TTCATCAGAT ACCCCCCACC CCCAGCCCTG CCCAGCCCAG CCCAGCCCAG
  CCCAGCCCAG CCCAACCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61322056	NES16929578	PERLEGEN	MM_PANEL2	f	SNP	C	T		C	C	C		T
ss323503884	CHEV_10_118289246	CHEVERUD	SCREENING_POP	f	SNP			T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49868559					SNP	C	T	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61322056	NES16929578	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:118688095 () rs orientation: forward

Symbol	Name	Function Class
Gm67702	predicted gene, 67702	691 bp downstream
Rr226050	regulatory region 226050	506 bp proximal
Rr226051	regulatory region 226051	1507 bp proximal