rs49868741 SNP Detail

Summary

• ID
  rs49868741
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135874999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAATT TTAAGTCTTC CGAGTAGTTA
  S
  GGCAGTCCGT GGTTACCACT CTTTC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321354270	CHEV_4_135703603	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs49868741					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135874999 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15099	CpG island 15099	within coordinates
Gm68296	predicted gene, 68296	154 bp downstream
Rr377254	regulatory region 377254	within coordinates
Rr602287	regulatory region 602287	491 bp distal
Rr602288	regulatory region 602288	within coordinates
Tssr39669	transcription start site region 39669	440 bp downstream