rs49868887 SNP Detail

Summary

• ID
  rs49868887
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:41340404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTTTGTTA TTGTTACCTC
  TGTAAAAGAT CAGAACAAAA TAAAACAGTC TGTCCCCCCA CTGTCCCCTT TTGCCATTCA
  GAAGTGAAGA AATTACCAAA AAGTATTGAT TGGGACAACA GTCAAGGGTA ACACAGAGTC
  AACTCTGTCC CTGTGTGTAG ATAAGGATAA ATGTGGAATA TTGTTCCATG TTTTCTTTAT
  R
  TTGTGTGACT TTAAAATAGC CTTTCAGCAT CAGGCTTGCC TTGACTCTAT AAGGTGAGGT
  GTGCCTCTGC TCACGTCTTA CATGTGCTAG GATGTTCATC TACATCACTA GAAGAGGGAT
  ATTTTTCATT GTGGATATTT TTGGTTTGGA GGAAAACAAT TGTAAAAGGC TTCTTTTTTA
  AAGGGGCAAC TGATTTGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60601051	NES16305989	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49868887					SNP	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60601051	NES16305989	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:41340404 () rs orientation: forward

Symbol	Name	Function Class
Rr662620	regulatory region 662620	within coordinates
Slc7a2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	within coordinates
Tssr76993	transcription start site region 76993	1724 bp downstream
Tssr76994	transcription start site region 76994	721 bp downstream
Tssr76995	transcription start site region 76995	485 bp upstream
Tssr76996	transcription start site region 76996	540 bp upstream
Tssr76997	transcription start site region 76997	649 bp upstream
Tssr76998	transcription start site region 76998	1034 bp upstream
Tssr81068	transcription start site region 81068	263 bp upstream