rs49869337 SNP Detail

Summary

• ID
  rs49869337
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:110975306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCCTTTCT CTGCTTTGCT
  GTAACTCCTT GTTAATGATT CTGAGACCAA TGTGGAAGGA GCTTTGATTT ATGACTTTGT
  TCCTTTGCTA TAAAAACTTC ATGAAGCCGC TACCACACTG GAACATGGAC TCTGATCTGT
  GTTCCTAGGC CGCGCTCATT CACATCTGGC TCCAGAATAA ACTCCCTTTA ACCTGCTTTG
  A
  GGTGAGTTAC GTTTTTGAGG TATGGACCAG ACAGCGTAAA ACATGGCTGC AGTTACAAGA
  TTCATTCTCA TTCTTGTGGT TTTTTTTTTT TTTTTTTCTT TTTATATCCC CGATCTTTTT
  TTTTTTTTTT TTTAATTTGC AGTGGGATAA CATTATCTAG AAGGAGAATC CTAGGTGGCT
  TGGCTTGTTC CCAAACAGAA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149056705	ENSMUSSNP1771863	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49869337					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:110975306 () rs orientation: forward

Symbol	Name	Function Class
Hscb	HscB iron-sulfur cluster co-chaperone	1639 bp downstream
Rr616963	regulatory region 616963	within coordinates
Rr616964	regulatory region 616964	194 bp proximal