rs49869421 SNP Detail

Summary

• ID
  rs49869421
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127272190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCAGTGAC ATTACACAAG
  GGAACTTTTT TTTTTTTTTG GTTTTTCAAG ACAGGGTTTC TCTGTATAGC CCTGGTTGTC
  CTGGAACTCA CTTTGTAGAT TCAGAAATCC GCCTGCCTCT GCCTACCAAG TGCTGGGATT
  AAAGGTGTGT GCCACCACGC CCGGCCTGGA ACTATTCTTT AAGACCCTAA AGAAAATGGT
  R
  AGAAGCCCAT GTCTGTTATG AAGAAGAGTT GGGATTGCAA ATGTATCAGG GCGGCTAACT
  TGTCTTCAAA TGCCTTTACA TGCCCTTAAC TCAGTTCTTC ACAGGGCACT TCCTCTCACT
  ACTAGTCACT CCAAATATTG CAAAAGGAAA GGATTCCCAG GTGTGTCTAG CCTGTGGCTC
  AACAGCCACA TGTGTTCCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135864375	ENSMUSSNP673339	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320954469	CHEV_3_127181459	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49869421					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127272190 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Gm42525	predicted gene 42525	1638 bp downstream
Gm43355	predicted gene 43355	894 bp downstream