rs49869608 SNP Detail

Summary

• ID
  rs49869608
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170471146 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCT GGCTTTAGGA ATGTAATGGA
  M
  CGGTTTTTAA CAAGGAAGAT GGGCT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146140251	ENSMUSSNP4591990	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
ss320111976	CHEV_1_172573708	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49869608					SNP	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170471146 () rs orientation: forward

Symbol	Name	Function Class
Cpgi995	CpG island 995	593 bp proximal
Olfml2b	olfactomedin-like 2B	955 bp upstream
Tssr280	transcription start site region 280	767 bp downstream
Tssr9927	transcription start site region 9927	726 bp downstream
Tssr9928	transcription start site region 9928	872 bp upstream
Tssr9929	transcription start site region 9929	913 bp upstream
Tssr9930	transcription start site region 9930	946 bp upstream
Tssr9931	transcription start site region 9931	995 bp upstream
Tssr9932	transcription start site region 9932	1012 bp upstream
Tssr9933	transcription start site region 9933	1208 bp upstream
Tssr14922	transcription start site region 14922	751 bp downstream
Tssr14923	transcription start site region 14923	802 bp downstream