rs49870348 SNP Detail

Summary

• ID
  rs49870348
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164266330 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCTCTCAGA AGCTAAGCCT ATCAAGCAGT GGGTGGCGTG
  GATTGGTGAC ACCACAGGAT AAAGGTCGGT TCTGGCCGAA AGCAGCCAAG AAGCATTCAC
  R
  AAAGGGGGCT CTGCAAATGG AGACACTGAG GCAGAGACCA AGTAAGTGAT TCTCTAAGCT
  GGCTCAGCCT CGCAGGAAGG CCAACAGTGA GAGGAACCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145978574	ENSMUSSNP5868109	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49870348					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164266330 () rs orientation: forward

Symbol	Name	Function Class
Atp1b1	ATPase, Na+/K+ transporting, beta 1 polypeptide	within coordinates
Nme7	NME/NM23 family member 7	1460 bp downstream
Tssr9784	transcription start site region 9784	254 bp downstream
Tssr14731	transcription start site region 14731	1336 bp upstream
Tssr14732	transcription start site region 14732	1001 bp upstream
Tssr14733	transcription start site region 14733	902 bp upstream
Tssr14734	transcription start site region 14734	857 bp upstream
Tssr14735	transcription start site region 14735	803 bp upstream
Tssr14736	transcription start site region 14736	762 bp upstream
Tssr14737	transcription start site region 14737	702 bp upstream
Tssr14738	transcription start site region 14738	566 bp upstream
Tssr14739	transcription start site region 14739	382 bp upstream
Tssr14740	transcription start site region 14740	341 bp upstream
Tssr14741	transcription start site region 14741	264 bp upstream
Tssr14742	transcription start site region 14742	222 bp upstream