rs49870543 SNP Detail

Summary

• ID
  rs49870543
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:93870529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCA TCAATCTTCC TAATTTCATT
  G
  AGAGCTGAAG ATTTACCTAG GGTAT                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147378581	ENSMUSSNP3735058	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss323407266	CHEV_10_93497412	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49870543					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:93870529 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2121	CpG island 2121	639 bp proximal
Fgd6	FYVE, RhoGEF and PH domain containing 6	1334 bp upstream
Gm49628	predicted gene, 49628	within coordinates
Rr402165	regulatory region 402165	1048 bp upstream
Tssr3327	transcription start site region 3327	1697 bp upstream
Tssr95293	transcription start site region 95293	782 bp upstream
Tssr95294	transcription start site region 95294	1377 bp upstream
Tssr95295	transcription start site region 95295	1390 bp upstream
Tssr98985	transcription start site region 98985	1061 bp downstream
Tssr98986	transcription start site region 98986	1104 bp downstream
Tssr98987	transcription start site region 98987	1122 bp downstream
Vezt	vezatin, adherens junctions transmembrane protein	within coordinates