rs49871352 SNP Detail

Summary

• ID
  rs49871352
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:116743501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCGCCGCCC GTAGCCGCCG CCGCCGTACC GACGGGGTGG
  CGGGCCCCGG CGGCTGTGGT GCGAGTCGGG CGGGCGGCCG TAGCGCGCCA TCTGCACCCG
  T
  AGCTCGCGGC CGTCGAGCAC CGCCCCGTCC ATGGCGTCCA TGGCGTCTTC GGCGTCGCGC
  TTGTCGTGGA ACCGGACGAA GGCGAAGCCC CGGGACTCC                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss132892183	ENSMUSSNP4475924	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs49871352					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:116743501 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4197	CpG island 4197	within coordinates
Mfsd11	major facilitator superfamily domain containing 11	within coordinates
Rr246191	regulatory region 246191	within coordinates
Rr403146	regulatory region 403146	319 bp upstream
Rr403147	regulatory region 403147	871 bp upstream
Srsf2	serine and arginine-rich splicing factor 2	within coordinates
Tssr106000	transcription start site region 106000	455 bp downstream
Tssr106001	transcription start site region 106001	101 bp downstream
Tssr106002	transcription start site region 106002	579 bp upstream
Tssr106003	transcription start site region 106003	782 bp upstream
Tssr106004	transcription start site region 106004	1077 bp upstream
Tssr112000	transcription start site region 112000	1744 bp upstream
Tssr112001	transcription start site region 112001	1481 bp upstream
Tssr112002	transcription start site region 112002	1404 bp upstream
Tssr112003	transcription start site region 112003	1360 bp upstream
Tssr112004	transcription start site region 112004	1200 bp upstream
Tssr112005	transcription start site region 112005	522 bp upstream
Tssr112006	transcription start site region 112006	483 bp upstream
Tssr112007	transcription start site region 112007	417 bp upstream
Tssr112008	transcription start site region 112008	311 bp upstream
Tssr112009	transcription start site region 112009	219 bp upstream
Tssr112010	transcription start site region 112010	408 bp downstream