rs49871599 SNP Detail

Summary

• ID
  rs49871599
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:112424472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAAAGCCA GGTGCTATCA
  CTCACCACCC AGGCTCTTGG AGGACAGATA GGAGAATCCT GGCTTCCTGC CAGCCAACCT
  AGGCACCCGG ACAAGGCCTG GGTGTCAGGG AGAGACTCTC TCTGGAAAAA ACAAGGAAGG
  TGATCCTGAA AAGAGATTCC TGATGGACCT GTGACATATA CACGCTCAGG TGTGCACACA
  Y
  ATAGATATAA AGCCAAAACC ACAAAGGAAA TGTCTTCATT TTGTAAAAAC ACAAACGAAC
  TAGACAGATG TCTTCCCCTA GCAATAGACA GTACCACCGT ATGCAAATAA GAGCAAGATT
  TCCCCCTCAG GTTTTTAACC CTAGAGGATG AATTTATTTG ACTGCTTCTC GAAGCAGTAT
  GGCTGGTGAC TTGTCAGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52696960	NES15533600	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49871599					SNP	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52696960	NES15533600	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:112424472 () rs orientation: forward

Symbol	Name	Function Class
Ankrd55	ankyrin repeat domain 55	513 bp upstream
Rr486330	regulatory region 486330	23 bp proximal
Rr486331	regulatory region 486331	893 bp proximal
Tssr121099	transcription start site region 121099	558 bp upstream
Tssr121100	transcription start site region 121100	578 bp upstream
Tssr121101	transcription start site region 121101	642 bp upstream
Tssr121102	transcription start site region 121102	852 bp upstream
Tssr124046	transcription start site region 124046	1210 bp downstream