rs49871836 SNP Detail

Summary

• ID
  rs49871836
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:48161686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTATATTT AACATCTATG
  AAACTAGAAT CAAACAACTG AGTTTAGCCA CGGAGCAATT ACAGCTTTAC CATTTACCTG
  GCGCCTTTAA CAGTGATACA TGTACTATCT ACTATGCTTC CAAAGTCTTG AAAATCCCCA
  ACAACAGATT TCAAAGCTAT TTCTTCTTTC ACTACACTGT ACTAATGAAT AACTATAAAA
  Y
  ACATATTTGT TTTAAATCAG ACAACTTGAG TGTTCCTTTG CTTACTTGTT AAGGTGTATA
  TAGAAGGCTC TTTCCGTAAC TCTCCACCTT ACAGACTGAG GCTCCCTAGG ACTCCCCGTT
  CTCCCAGTGC TGCAACAGAT GGGCCATCAC TGTCGCCCAG TGTTTACATG GAAGCAACAC
  GTATTCAACT CACTGAGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60606900	NES16304517	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49871836					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60606900	NES16304517	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:48161686 () rs orientation: forward

Symbol	Name	Function Class
Cdkn2aip	CDKN2A interacting protein	693 bp downstream
Gm64835	predicted gene, 64835	1724 bp upstream
Rr663259	regulatory region 663259	1735 bp distal
Rr663260	regulatory region 663260	1297 bp distal
Rr663261	regulatory region 663261	65 bp distal
Tssr81246	transcription start site region 81246	1969 bp downstream