rs49872991 SNP Detail

Summary

• ID
  rs49872991
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:4218967 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TAAGC CCTTCGCCTT GTGGAGCATG
  R
  TAGTTAAAAA GCCCCTAAGT CCACA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss52129293	NES15245702	PERLEGEN	MM_PANEL2	f	SNP		A	A	G			G	G
ss146743528	ENSMUSSNP5870922	ENSEMBL	ENSEMBL_Sanger	f	SNP	A				G
ss323240828	CHEV_10_6077574	CHEVERUD	SCREENING_POP	f	SNP						A			A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs49872991					SNP	A	A	A	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52129293	NES15245702	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:4218967 () rs orientation: reverse

Symbol	Name	Function Class
Akap12	A kinase anchor protein 12	Intron
Cpgi1267	CpG island 1267	1825 bp distal
Gm67397	predicted gene, 67397	within coordinates
Rr384064	regulatory region 384064	144 bp upstream
Rr426945	regulatory region 426945	1671 bp distal
Tssr92242	transcription start site region 92242	483 bp downstream