rs49873138 SNP Detail

Summary

• ID
  rs49873138
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:87342172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTGCCAA AGGTACACAG
  GATTCTCATT TGTCTACATC CGTGCTCACT TTTGGTTTAT TTTGTAGTTG TTGGGATATC
  CCATTGTATG TACCGTTTGT TTGAGCGGAG GGAGTTTAGC CCCTGGTGAG CTCCAGCTCT
  AATTCTCCTG ACTTGGCCTC AAGGGCGCTG GGATTACGGA TGCCTTCTCC CAAACCTAGA
  R
  TGCTGTGGTG TCTGGCTCTG ATTGCTGTGT TGAGCATCTT TACCTGTGTT TATGTCTAAA
  GGAGTTTTTC CCTTTCTCAG CCTCTATCTC CCTTTTTGAG ATGATATCTT GTATTACTTA
  CACTGATTTC ACACTTCTGG GCTGAAGGCC CCTGCCCCAG CCCTCCGTAG TAGCTAGAAA
  TAATAAAGCC AACAGACACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60763735	NES16400963	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49873138					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60763735	NES16400963	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:87342172 () rs orientation: forward

Symbol	Name	Function Class
Gigyf2	GRB10 interacting GYF protein 2	within coordinates
Gm55682	predicted gene, 55682	805 bp downstream