rs49873267 SNP Detail

Summary

• ID
  rs49873267
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:39009726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATCTATG AGGCTATAGA
  GAGAAGAAAG GGAAGAAGAA ATGCTGTAGT CAGTATAATC TGAAAAAAAA AGGTTTTGAA
  GAATTAAAGA AAACTTTTCT TCTAGGTCCC AAGCATTATA TGACATGACT TTTAGGGAAA
  AATACATTAA ACAGGACTTA AAGTAACAAT TTACATTCTT TTTCAAACTT TACCACTGTA
  Y
  TAGATTTTAT TGTGATTTTA AATTTTATTG CAATTCATGT GTTTGCTATT TTTACATTTA
  GCTACATATT ACCTAGATAT TTATCATTAA AAATAATTTA ATGCCTTTTT ACACTAATAT
  TCATATGTAA AAATTGCACA ATGCCTTATA CTAATGAATA ACAATATTCA ACATACTATG
  GAGAAAGCCT CAAAATGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61383208	NES16759283	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49873267					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61383208	NES16759283	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:39009726 () rs orientation: forward

Symbol	Name	Function Class
Gm47085	predicted gene, 47085	815 bp downstream