rs49873435 SNP Detail

Summary

• ID
  rs49873435
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:107170060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGAGTCC CAGCAGGCAA
  AAACTGGATC CAGTTCTCAG GCCACACTGC ATCCTTGCCC GATACACTAG CTAAATTCCC
  AGAAGAGAAG GAGCCAGGAA GAGGAAGGGA GCCAGGGCTC ACCACATCAT CAAGAAGGTG
  AGACAGGAGT GTCTATGAGC CTGGTAGTTA GGAAACACTG AACTAGAGAC TCTCCTGCCA
  R
  CATCCTCTTA ACCCTTGGCA CACACCGTAG CAGCTTCAGT GTATCTGTAG GGCCAAGTCC
  AGAAAACAGC TGCCTGAATA AACCCAGTAG ACACACTTCA GGAACCTTCT GTGGGGATCT
  AATTTCCACA CCCTCGTGAG TTTCCAGCAG TCCAATTTGG CAGGATGAAA ACTCCAAGTT
  GTACTGCAGG CTTGCTACTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61696344	NES17647269	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49873435					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61696344	NES17647269	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:107170060 () rs orientation: forward

Symbol	Name	Function Class
D12Mit122	DNA segment, Chr 12, Massachusetts Institute of Technology 122	515 bp distal
Gm5187	predicted gene 5187	1275 bp downstream