rs49875073 SNP Detail

Summary

• ID
  rs49875073
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:153561645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTAATAAA GTCAATCTAT
  ATTACCAATA AATTCTGTAA AATATCCACA TATTTAAAAA CTATATGAAG GTTAAAAAGA
  TGGCTCAGTT GTTAAGTTGT TACTTTTTGC TATTCCACAG GACCTGAGTT AGATTCTAGG
  ACCCACACTG GGAGCTTGCA GCCATTTGAT AAATCCATTT TGAGGGGGTC CAGTGCCCTG
  K
  CCTGGCCTCT GCTGGTACCA AGTGAATGTG GCACATACTC ATACAGACAA AAACACAGAC
  ACATGAACCA GTCACAGCAT ATGCAGTCTG TGAATAATTT TGTTGTTCCA ATTACTATGA
  ATATTGCAAC TCCTAAATAA ATGATTCAGG GTACACCCAA ATCCAGGAAC TTATTTAAGA
  AAACAAAAAA CCACAGGGTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136114446	ENSMUSSNP6069425	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49875073					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153561645 () rs orientation: forward

Symbol	Name	Function Class
Msh4	mutS homolog 4	1138 bp downstream