rs49875161 SNP Detail

Summary

• ID
  rs49875161
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118495491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAC AAACAAAAAA ACCAAAAAAC
  A
  AAAAACTGTG AGCTCTTGGA CTAAG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147308926	ENSMUSSNP4414970	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49875161					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118495491 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12085	CpG island 12085	1457 bp distal
Gm75659	predicted gene, 75659	1019 bp upstream
Pak6	p21 (RAC1) activated kinase 6	within coordinates
Rr55423	regulatory region 55423	within coordinates
Tssr19565	transcription start site region 19565	1701 bp downstream
Tssr19566	transcription start site region 19566	1682 bp downstream
Tssr19567	transcription start site region 19567	1248 bp downstream