rs49875381 SNP Detail

Summary

• ID
  rs49875381
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127318066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCACTAAC CCAGGCCCTC
  AGCTCAGCTC TCTGTGTCCT TCATGTCGCT TTCTCCCAGT TTATTCTGTA CAGAATTTTT
  CTCTCTGATT TCCTTCATTG CAGACTTCTC AGGTACCAGT TTTAAAATGT TTACATCCTA
  CCTGTCTCAC CGTATGTTTA TGTTCTCTTC AGATGCATAT ACATGCTGTG TAGATTGTTT
  R
  TAAAGTAACT ATAGTGGTGC ACGCCTTTAA TCTCAGCCCT TAAGAGGATG AGGCAGAAGG
  ACTGCCCTGA GTGCAAGGCC AGCCTAGGCT ACATAGTGAA TTACAGTCCA GCCTGGGTGA
  GAGTCATATC CTGTCTCAAA AATAGCAAAG ATAAATTTTT AAAAATTAAA ATAAATTGTT
  TGCATACTAA ATACAAATCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61334482	NES16949972	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49875381					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61334482	NES16949972	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127318066 () rs orientation: forward

Symbol	Name	Function Class
R3hdm2	R3H domain containing 2	within coordinates
Rr213570	regulatory region 213570	666 bp distal
Rr218482	regulatory region 218482	66 bp distal
Tssr96215	transcription start site region 96215	525 bp downstream
Tssr96216	transcription start site region 96216	498 bp downstream