rs49875538 SNP Detail

Summary

• ID
  rs49875538
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:77836869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTACTATGC TTCTCTCAAG
  GCAGAGCAGA AATGCAGAGC AGAAATGCAG TCTGTAGTGG ACAGCAGCAC TTAGGCTGAG
  CTCTGAGGTG TTTCAGCCGG CATTGGCTGG GGTAAGGCAG GTTGCCGTAG GCAGTGCAGT
  GTTCATACGT GAGGGGGCAG GGGGCAGGGG CTCAGGCAGA CATGCCTTGG GTTCATTACG
  Y
  GTTTGATGTG GAATTAATTT TTGGTCATTG TGCATTCAAG ACTCTTTTAC TGTTCCCAGC
  TTTGCATGTT GCTTTTTTCA TGATTTCCAG TAACGTGACC TCTAGTTTAA AAAGTTGGGT
  CATGGAAAAA CCTTAAGGAA AACCATAGAA AAACCTTGGT ATGCGTCAGT CCCTTGACGT
  GTCTTGACTA CAGTAGAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136662679	ENSMUSSNP4031922	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49875538					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77836869 () rs orientation: forward

Symbol	Name	Function Class
Elovl5	ELOVL fatty acid elongase 5	within coordinates
Rr401538	regulatory region 401538	1278 bp upstream
Rr683432	regulatory region 683432	553 bp proximal
Rr683433	regulatory region 683433	1264 bp proximal