rs49875808 SNP Detail

Summary

• ID
  rs49875808
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:29300164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACCCGAAC CAGTGATACG
  GAGCCTGGAG ACCAGCATGG CCTTTGGTAT GCTAACAGGC ATCACAGATA GCCATTTATC
  ACTTCTGCCA GCGATAAGGG AAATGGTTCC TTTGAAATGG GAAACTGGCT TCACAGGTGA
  CTAAGGAATG CTGGCTTTTG CCTAGCAGCC AGAGTCCAGG GAGCTGGAGT TTCCTTTGGC
  Y
  CTGACAGGTG GCAGGGACCC TTAACTTCTA AGCCATCTGG CCCCTGTTTG TTTTAAAGAT
  AAGGTCTCCA TAGCCCAGGC TGGCCGAGCA CACCTAGAGA GTCAAAGATG ACCTTGAACC
  CCTCATTTTC CTGGTTTCCC GTCCCGAGCG CGTGGATCAC AGGCCTATGC CTCCTCAGCA
  CCCAGTGTAT GGAACGTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60559213	NES16575496	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49875808					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60559213	NES16575496	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:29300164 () rs orientation: forward

Symbol	Name	Function Class
Rr370203	regulatory region 370203	810 bp upstream
Rr392491	regulatory region 392491	1255 bp downstream
Rr524788	regulatory region 524788	1649 bp distal
Rr524789	regulatory region 524789	within coordinates
Tssr143493	transcription start site region 143493	386 bp upstream
Tssr147178	transcription start site region 147178	334 bp upstream