rs49876052 SNP Detail

Summary

• ID
  rs49876052
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:91402131 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGACTTATA AGTGGACATG GAGTACAATG GAGTCAGCTT
  GACATGGGCC TTTTCCTGAT GTGCTTGCTG TTCCTGTGTC TTGGGAGCAA TGACTCCAAC
  R
  GCTCAGCAAA ATGGGGATGA ACCAGAAATG GAAGGGGCAC TATGCATTCA AAGGCCCAAC
  TCAGAAAGTC TTAAATCTGT GAACATTCCT CAGTGAAAAT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60293382	NES15791724	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49876052					SNP	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60293382	NES15791724	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:91402131 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9653	CpG island 9653	1734 bp distal
Nrxn1	neurexin I	1632 bp upstream
Rr334029	regulatory region 334029	1531 bp distal
Rr340336	regulatory region 340336	531 bp distal
Tssr149870	transcription start site region 149870	1881 bp upstream
Tssr149871	transcription start site region 149871	1845 bp upstream
Tssr149872	transcription start site region 149872	1826 bp upstream
Tssr149873	transcription start site region 149873	1708 bp upstream
Tssr149874	transcription start site region 149874	1674 bp upstream
Tssr149875	transcription start site region 149875	1626 bp upstream